The Mouse Genome Database (MGD): From genes to mice - A community resource for mouse biology

Janan T. Eppig; Carol J. Bult; James A. Kadin; Joel E. Richardson; Judith A. Blake; A. Anagnostopoulos; R. M. Baldarelli; M. Baya; J. S. Beal; S. M. Bello; W. J. Boddy; D. W. Bradt; D. L. Burkart; N. E. Butler; J. Campbell; M. A. Cassell; L. E. Corbani; S. L. Cousins; D. J. Dahmen; H. Dene; A. D. Diehl; H. J. Drabkin; K. S. Frazer; P. Frost; L. H. Glass; C. W. Goldsmith; P. L. Grant; M. Lennon-Pierce; J. Lewis; I. Lu; L. J. Maltais; M. McAndrews-Hill; L. McClellan; D. B. Miers; L. A. Miller; L. Ni; J. E. Ormsby; D. Qi; T. B.K. Reddy; D. J. Reed; B. Richards-Smith; D. R. Shaw; R. Sinclair; C. L. Smith; P. Szauter; M. B. Walker; D. O. Walton; L. L. Washburn; I. T. Witham; Y. Zhu

doi:10.1093/nar/gki113

The Mouse Genome Database (MGD): From genes to mice - A community resource for mouse biology

Janan T. Eppig
, Carol J. Bult
, James A. Kadin
, Joel E. Richardson
, Judith A. Blake
, A. Anagnostopoulos
, R. M. Baldarelli
, M. Baya
, J. S. Beal
, S. M. Bello
, W. J. Boddy
, D. W. Bradt
, D. L. Burkart
, N. E. Butler
, J. Campbell
, M. A. Cassell
, L. E. Corbani
, S. L. Cousins
, D. J. Dahmen
, H. Dene

A. D. Diehl, H. J. Drabkin, K. S. Frazer, P. Frost, L. H. Glass, C. W. Goldsmith, P. L. Grant, M. Lennon-Pierce, J. Lewis, I. Lu, L. J. Maltais, M. McAndrews-Hill, L. McClellan, D. B. Miers, L. A. Miller, L. Ni, J. E. Ormsby, D. Qi, T. B.K. Reddy, D. J. Reed, B. Richards-Smith, D. R. Shaw, R. Sinclair, C. L. Smith, P. Szauter, M. B. Walker, D. O. Walton, L. L. Washburn, I. T. Witham, Y. Zhu

Department of Biomedical Informatics

Jackson Laboratory

Research output: Contribution to journal › Article › peer-review

209 Scopus citations

Abstract

The Mouse Genome Database (MGD) forms the core of the Mouse Genome Informatics (MGI) system (http://www.informatics.jax.org), a model organism database resource for the laboratory mouse. MGD provides essential integration of experimental knowledge for the mouse system with information annotated from both literature and online sources. MGD curates and presents consensus and experimental data representations of genotype (sequence) through phenotype information, including highly detailed reports about genes and gene products. Primary foci of integration are through representations of relationships among genes, sequences and phenotypes. MGD collaborates with other bioinformatics groups to curate a definitive set of information about the laboratory mouse and to build and implement the data and semantic standards that are essential for comparative genome analysis. Recent improvements in MGD discussed here include the enhancement of phenotype resources, the re-development of the International Mouse Strain Resource, IMSR, the update of mammalian orthology datasets and the electronic publication of classic books in mouse genetics.

Original language	English
Pages (from-to)	D471-D475
Journal	Nucleic Acids Research
Volume	33
Issue number	DATABASE ISS.
DOIs	https://doi.org/10.1093/nar/gki113
State	Published - Jan 1 2005

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Eppig, J. T., Bult, C. J., Kadin, J. A., Richardson, J. E., Blake, J. A., Anagnostopoulos, A., Baldarelli, R. M., Baya, M., Beal, J. S., Bello, S. M., Boddy, W. J., Bradt, D. W., Burkart, D. L., Butler, N. E., Campbell, J., Cassell, M. A., Corbani, L. E., Cousins, S. L., Dahmen, D. J., ... Zhu, Y. (2005). The Mouse Genome Database (MGD): From genes to mice - A community resource for mouse biology. Nucleic Acids Research, 33(DATABASE ISS.), D471-D475. https://doi.org/10.1093/nar/gki113

@article{d04380c5000b4df6998a594f56dee4bd,

title = "The Mouse Genome Database (MGD): From genes to mice - A community resource for mouse biology",

abstract = "The Mouse Genome Database (MGD) forms the core of the Mouse Genome Informatics (MGI) system (http://www.informatics.jax.org), a model organism database resource for the laboratory mouse. MGD provides essential integration of experimental knowledge for the mouse system with information annotated from both literature and online sources. MGD curates and presents consensus and experimental data representations of genotype (sequence) through phenotype information, including highly detailed reports about genes and gene products. Primary foci of integration are through representations of relationships among genes, sequences and phenotypes. MGD collaborates with other bioinformatics groups to curate a definitive set of information about the laboratory mouse and to build and implement the data and semantic standards that are essential for comparative genome analysis. Recent improvements in MGD discussed here include the enhancement of phenotype resources, the re-development of the International Mouse Strain Resource, IMSR, the update of mammalian orthology datasets and the electronic publication of classic books in mouse genetics.",

author = "Eppig, \{Janan T.\} and Bult, \{Carol J.\} and Kadin, \{James A.\} and Richardson, \{Joel E.\} and Blake, \{Judith A.\} and A. Anagnostopoulos and Baldarelli, \{R. M.\} and M. Baya and Beal, \{J. S.\} and Bello, \{S. M.\} and Boddy, \{W. J.\} and Bradt, \{D. W.\} and Burkart, \{D. L.\} and Butler, \{N. E.\} and J. Campbell and Cassell, \{M. A.\} and Corbani, \{L. E.\} and Cousins, \{S. L.\} and Dahmen, \{D. J.\} and H. Dene and Diehl, \{A. D.\} and Drabkin, \{H. J.\} and Frazer, \{K. S.\} and P. Frost and Glass, \{L. H.\} and Goldsmith, \{C. W.\} and Grant, \{P. L.\} and M. Lennon-Pierce and J. Lewis and I. Lu and Maltais, \{L. J.\} and M. McAndrews-Hill and L. McClellan and Miers, \{D. B.\} and Miller, \{L. A.\} and L. Ni and Ormsby, \{J. E.\} and D. Qi and Reddy, \{T. B.K.\} and Reed, \{D. J.\} and B. Richards-Smith and Shaw, \{D. R.\} and R. Sinclair and Smith, \{C. L.\} and P. Szauter and Walker, \{M. B.\} and Walton, \{D. O.\} and Washburn, \{L. L.\} and Witham, \{I. T.\} and Y. Zhu",

year = "2005",

month = jan,

day = "1",

doi = "10.1093/nar/gki113",

language = "English",

volume = "33",

pages = "D471--D475",

journal = "Nucleic Acids Research",

issn = "0305-1048",

publisher = "Oxford University Press",

number = "DATABASE ISS.",

}

Eppig, JT, Bult, CJ, Kadin, JA, Richardson, JE, Blake, JA, Anagnostopoulos, A, Baldarelli, RM, Baya, M, Beal, JS, Bello, SM, Boddy, WJ, Bradt, DW, Burkart, DL, Butler, NE, Campbell, J, Cassell, MA, Corbani, LE, Cousins, SL, Dahmen, DJ, Dene, H, Diehl, AD, Drabkin, HJ, Frazer, KS, Frost, P, Glass, LH, Goldsmith, CW, Grant, PL, Lennon-Pierce, M, Lewis, J, Lu, I, Maltais, LJ, McAndrews-Hill, M, McClellan, L, Miers, DB, Miller, LA, Ni, L, Ormsby, JE, Qi, D, Reddy, TBK, Reed, DJ, Richards-Smith, B, Shaw, DR, Sinclair, R, Smith, CL, Szauter, P, Walker, MB, Walton, DO, Washburn, LL, Witham, IT & Zhu, Y 2005, 'The Mouse Genome Database (MGD): From genes to mice - A community resource for mouse biology', Nucleic Acids Research, vol. 33, no. DATABASE ISS., pp. D471-D475. https://doi.org/10.1093/nar/gki113

TY - JOUR

T1 - The Mouse Genome Database (MGD)

T2 - From genes to mice - A community resource for mouse biology

AU - Eppig, Janan T.

AU - Bult, Carol J.

AU - Kadin, James A.

AU - Richardson, Joel E.

AU - Blake, Judith A.

AU - Anagnostopoulos, A.

AU - Baldarelli, R. M.

AU - Baya, M.

AU - Beal, J. S.

AU - Bello, S. M.

AU - Boddy, W. J.

AU - Bradt, D. W.

AU - Burkart, D. L.

AU - Butler, N. E.

AU - Campbell, J.

AU - Cassell, M. A.

AU - Corbani, L. E.

AU - Cousins, S. L.

AU - Dahmen, D. J.

AU - Dene, H.

AU - Diehl, A. D.

AU - Drabkin, H. J.

AU - Frazer, K. S.

AU - Frost, P.

AU - Glass, L. H.

AU - Goldsmith, C. W.

AU - Grant, P. L.

AU - Lennon-Pierce, M.

AU - Lewis, J.

AU - Lu, I.

AU - Maltais, L. J.

AU - McAndrews-Hill, M.

AU - McClellan, L.

AU - Miers, D. B.

AU - Miller, L. A.

AU - Ni, L.

AU - Ormsby, J. E.

AU - Qi, D.

AU - Reddy, T. B.K.

AU - Reed, D. J.

AU - Richards-Smith, B.

AU - Shaw, D. R.

AU - Sinclair, R.

AU - Smith, C. L.

AU - Szauter, P.

AU - Walker, M. B.

AU - Walton, D. O.

AU - Washburn, L. L.

AU - Witham, I. T.

AU - Zhu, Y.

PY - 2005/1/1

Y1 - 2005/1/1

N2 - The Mouse Genome Database (MGD) forms the core of the Mouse Genome Informatics (MGI) system (http://www.informatics.jax.org), a model organism database resource for the laboratory mouse. MGD provides essential integration of experimental knowledge for the mouse system with information annotated from both literature and online sources. MGD curates and presents consensus and experimental data representations of genotype (sequence) through phenotype information, including highly detailed reports about genes and gene products. Primary foci of integration are through representations of relationships among genes, sequences and phenotypes. MGD collaborates with other bioinformatics groups to curate a definitive set of information about the laboratory mouse and to build and implement the data and semantic standards that are essential for comparative genome analysis. Recent improvements in MGD discussed here include the enhancement of phenotype resources, the re-development of the International Mouse Strain Resource, IMSR, the update of mammalian orthology datasets and the electronic publication of classic books in mouse genetics.

AB - The Mouse Genome Database (MGD) forms the core of the Mouse Genome Informatics (MGI) system (http://www.informatics.jax.org), a model organism database resource for the laboratory mouse. MGD provides essential integration of experimental knowledge for the mouse system with information annotated from both literature and online sources. MGD curates and presents consensus and experimental data representations of genotype (sequence) through phenotype information, including highly detailed reports about genes and gene products. Primary foci of integration are through representations of relationships among genes, sequences and phenotypes. MGD collaborates with other bioinformatics groups to curate a definitive set of information about the laboratory mouse and to build and implement the data and semantic standards that are essential for comparative genome analysis. Recent improvements in MGD discussed here include the enhancement of phenotype resources, the re-development of the International Mouse Strain Resource, IMSR, the update of mammalian orthology datasets and the electronic publication of classic books in mouse genetics.

UR - https://www.scopus.com/pages/publications/13444254254

U2 - 10.1093/nar/gki113

DO - 10.1093/nar/gki113

M3 - Article

C2 - 15608240

AN - SCOPUS:13444254254

SN - 0305-1048

VL - 33

SP - D471-D475

JO - Nucleic Acids Research

JF - Nucleic Acids Research

IS - DATABASE ISS.

ER -

The Mouse Genome Database (MGD): From genes to mice - A community resource for mouse biology

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