The Mouse Genome Database genotypes::Phenotypes

Judith A. Blake; Carol J. Bult; Janan T. Eppig; James A. Kadin; Joel E. Richardson; M. T. Airey; A. Anagnostopoulos; R. P. Babiuk; R. M. Baldarelli; M. J. Baya; J. S. Beal; S. M. Bello; D. W. Bradt; D. L. Burkart; N. E. Butler; J. W. Campbell; L. E. Corbani; S. L. Cousins; S. J. Dahmen; H. Dene; A. D. Diehl; K. L. Forthofer; K. S. Frazer; D. B. Geel; M. M. Hall; M. Knowlton; J. R. Lewis; I. Lu; L. J. Maltias; M. McAndrews-Hill; S. McClatchy; M. J. McCrossin; T. F. Meehan; D. B. Miers; L. A. Miller; L. Ni; H. Onda; J. E. Ormsby; D. J. Reed; B. Richards-Smith; D. R. Shaw; R. Sinclair; D. Sitnikov; C. L. Smith; P. Szauter; M. Tomczuk; L. L. Washburn; I. T. Witham; Y. Zhu

doi:10.1093/nar/gkn886

The Mouse Genome Database genotypes::Phenotypes

Judith A. Blake
, Carol J. Bult
, Janan T. Eppig
, James A. Kadin
, Joel E. Richardson
, M. T. Airey
, A. Anagnostopoulos
, R. P. Babiuk
, R. M. Baldarelli
, M. J. Baya
, J. S. Beal
, S. M. Bello
, D. W. Bradt
, D. L. Burkart
, N. E. Butler
, J. W. Campbell
, L. E. Corbani
, S. L. Cousins
, S. J. Dahmen
, H. Dene

A. D. Diehl, K. L. Forthofer, K. S. Frazer, D. B. Geel, M. M. Hall, M. Knowlton, J. R. Lewis, I. Lu, L. J. Maltias, M. McAndrews-Hill, S. McClatchy, M. J. McCrossin, T. F. Meehan, D. B. Miers, L. A. Miller, L. Ni, H. Onda, J. E. Ormsby, D. J. Reed, B. Richards-Smith, D. R. Shaw, R. Sinclair, D. Sitnikov, C. L. Smith, P. Szauter, M. Tomczuk, L. L. Washburn, I. T. Witham, Y. Zhu

Department of Biomedical Informatics

Jackson Laboratory

Research output: Contribution to journal › Article › peer-review

94 Scopus citations

Abstract

The Mouse Genome Database (MGD, http://www.informatics.jax.org/), integrates genetic, genomic and phenotypic information about the laboratory mouse, a primary animal model for studying human biology and disease. Information in MGD is obtained from diverse sources, including the scientific literature and external databases, such as EntrezGene, UniProt and GenBank. In addition to its extensive collection of phenotypic allele information for mouse genes that is curated from the published biomedical literature and researcher submission, MGI includes a comprehensive representation of mouse genes including sequence, functional (GO) and comparative information. MGD provides a data mining platform that enables the development of translational research hypotheses based on comparative genotype, phenotype and functional analyses. MGI can be accessed by a variety of methods including web-based search forms, a genome sequence browser and downloadable database reports. Programmatic access is available using web services. Recent improvements in MGD described here include the unified mouse gene catalog for NCBI Build 37 of the reference genome assembly, and improved representation of mouse mutants and phenotypes.

Original language	English
Pages (from-to)	D712-D719
Journal	Nucleic Acids Research
Volume	37
Issue number	SUPPL. 1
DOIs	https://doi.org/10.1093/nar/gkn886
State	Published - 2009

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Blake, J. A., Bult, C. J., Eppig, J. T., Kadin, J. A., Richardson, J. E., Airey, M. T., Anagnostopoulos, A., Babiuk, R. P., Baldarelli, R. M., Baya, M. J., Beal, J. S., Bello, S. M., Bradt, D. W., Burkart, D. L., Butler, N. E., Campbell, J. W., Corbani, L. E., Cousins, S. L., Dahmen, S. J., ... Zhu, Y. (2009). The Mouse Genome Database genotypes::Phenotypes. Nucleic Acids Research, 37(SUPPL. 1), D712-D719. https://doi.org/10.1093/nar/gkn886

@article{f87836355ef14b48996f4f1b3e5eea8f,

title = "The Mouse Genome Database genotypes::Phenotypes",

abstract = "The Mouse Genome Database (MGD, http://www.informatics.jax.org/), integrates genetic, genomic and phenotypic information about the laboratory mouse, a primary animal model for studying human biology and disease. Information in MGD is obtained from diverse sources, including the scientific literature and external databases, such as EntrezGene, UniProt and GenBank. In addition to its extensive collection of phenotypic allele information for mouse genes that is curated from the published biomedical literature and researcher submission, MGI includes a comprehensive representation of mouse genes including sequence, functional (GO) and comparative information. MGD provides a data mining platform that enables the development of translational research hypotheses based on comparative genotype, phenotype and functional analyses. MGI can be accessed by a variety of methods including web-based search forms, a genome sequence browser and downloadable database reports. Programmatic access is available using web services. Recent improvements in MGD described here include the unified mouse gene catalog for NCBI Build 37 of the reference genome assembly, and improved representation of mouse mutants and phenotypes.",

author = "Blake, \{Judith A.\} and Bult, \{Carol J.\} and Eppig, \{Janan T.\} and Kadin, \{James A.\} and Richardson, \{Joel E.\} and Airey, \{M. T.\} and A. Anagnostopoulos and Babiuk, \{R. P.\} and Baldarelli, \{R. M.\} and Baya, \{M. J.\} and Beal, \{J. S.\} and Bello, \{S. M.\} and Bradt, \{D. W.\} and Burkart, \{D. L.\} and Butler, \{N. E.\} and Campbell, \{J. W.\} and Corbani, \{L. E.\} and Cousins, \{S. L.\} and Dahmen, \{S. J.\} and H. Dene and Diehl, \{A. D.\} and Forthofer, \{K. L.\} and Frazer, \{K. S.\} and Geel, \{D. B.\} and Hall, \{M. M.\} and M. Knowlton and Lewis, \{J. R.\} and I. Lu and Maltias, \{L. J.\} and M. McAndrews-Hill and S. McClatchy and McCrossin, \{M. J.\} and Meehan, \{T. F.\} and Miers, \{D. B.\} and Miller, \{L. A.\} and L. Ni and H. Onda and Ormsby, \{J. E.\} and Reed, \{D. J.\} and B. Richards-Smith and Shaw, \{D. R.\} and R. Sinclair and D. Sitnikov and Smith, \{C. L.\} and P. Szauter and M. Tomczuk and Washburn, \{L. L.\} and Witham, \{I. T.\} and Y. Zhu",

year = "2009",

doi = "10.1093/nar/gkn886",

language = "English",

volume = "37",

pages = "D712--D719",

journal = "Nucleic Acids Research",

issn = "0305-1048",

publisher = "Oxford University Press",

number = "SUPPL. 1",

}

Blake, JA, Bult, CJ, Eppig, JT, Kadin, JA, Richardson, JE, Airey, MT, Anagnostopoulos, A, Babiuk, RP, Baldarelli, RM, Baya, MJ, Beal, JS, Bello, SM, Bradt, DW, Burkart, DL, Butler, NE, Campbell, JW, Corbani, LE, Cousins, SL, Dahmen, SJ, Dene, H, Diehl, AD, Forthofer, KL, Frazer, KS, Geel, DB, Hall, MM, Knowlton, M, Lewis, JR, Lu, I, Maltias, LJ, McAndrews-Hill, M, McClatchy, S, McCrossin, MJ, Meehan, TF, Miers, DB, Miller, LA, Ni, L, Onda, H, Ormsby, JE, Reed, DJ, Richards-Smith, B, Shaw, DR, Sinclair, R, Sitnikov, D, Smith, CL, Szauter, P, Tomczuk, M, Washburn, LL, Witham, IT & Zhu, Y 2009, 'The Mouse Genome Database genotypes::Phenotypes', Nucleic Acids Research, vol. 37, no. SUPPL. 1, pp. D712-D719. https://doi.org/10.1093/nar/gkn886

TY - JOUR

T1 - The Mouse Genome Database genotypes::Phenotypes

AU - Blake, Judith A.

AU - Bult, Carol J.

AU - Eppig, Janan T.

AU - Kadin, James A.

AU - Richardson, Joel E.

AU - Airey, M. T.

AU - Anagnostopoulos, A.

AU - Babiuk, R. P.

AU - Baldarelli, R. M.

AU - Baya, M. J.

AU - Beal, J. S.

AU - Bello, S. M.

AU - Bradt, D. W.

AU - Burkart, D. L.

AU - Butler, N. E.

AU - Campbell, J. W.

AU - Corbani, L. E.

AU - Cousins, S. L.

AU - Dahmen, S. J.

AU - Dene, H.

AU - Diehl, A. D.

AU - Forthofer, K. L.

AU - Frazer, K. S.

AU - Geel, D. B.

AU - Hall, M. M.

AU - Knowlton, M.

AU - Lewis, J. R.

AU - Lu, I.

AU - Maltias, L. J.

AU - McAndrews-Hill, M.

AU - McClatchy, S.

AU - McCrossin, M. J.

AU - Meehan, T. F.

AU - Miers, D. B.

AU - Miller, L. A.

AU - Ni, L.

AU - Onda, H.

AU - Ormsby, J. E.

AU - Reed, D. J.

AU - Richards-Smith, B.

AU - Shaw, D. R.

AU - Sinclair, R.

AU - Sitnikov, D.

AU - Smith, C. L.

AU - Szauter, P.

AU - Tomczuk, M.

AU - Washburn, L. L.

AU - Witham, I. T.

AU - Zhu, Y.

PY - 2009

Y1 - 2009

N2 - The Mouse Genome Database (MGD, http://www.informatics.jax.org/), integrates genetic, genomic and phenotypic information about the laboratory mouse, a primary animal model for studying human biology and disease. Information in MGD is obtained from diverse sources, including the scientific literature and external databases, such as EntrezGene, UniProt and GenBank. In addition to its extensive collection of phenotypic allele information for mouse genes that is curated from the published biomedical literature and researcher submission, MGI includes a comprehensive representation of mouse genes including sequence, functional (GO) and comparative information. MGD provides a data mining platform that enables the development of translational research hypotheses based on comparative genotype, phenotype and functional analyses. MGI can be accessed by a variety of methods including web-based search forms, a genome sequence browser and downloadable database reports. Programmatic access is available using web services. Recent improvements in MGD described here include the unified mouse gene catalog for NCBI Build 37 of the reference genome assembly, and improved representation of mouse mutants and phenotypes.

AB - The Mouse Genome Database (MGD, http://www.informatics.jax.org/), integrates genetic, genomic and phenotypic information about the laboratory mouse, a primary animal model for studying human biology and disease. Information in MGD is obtained from diverse sources, including the scientific literature and external databases, such as EntrezGene, UniProt and GenBank. In addition to its extensive collection of phenotypic allele information for mouse genes that is curated from the published biomedical literature and researcher submission, MGI includes a comprehensive representation of mouse genes including sequence, functional (GO) and comparative information. MGD provides a data mining platform that enables the development of translational research hypotheses based on comparative genotype, phenotype and functional analyses. MGI can be accessed by a variety of methods including web-based search forms, a genome sequence browser and downloadable database reports. Programmatic access is available using web services. Recent improvements in MGD described here include the unified mouse gene catalog for NCBI Build 37 of the reference genome assembly, and improved representation of mouse mutants and phenotypes.

UR - https://www.scopus.com/pages/publications/58149197592

U2 - 10.1093/nar/gkn886

DO - 10.1093/nar/gkn886

M3 - Article

C2 - 18981050

AN - SCOPUS:58149197592

SN - 0305-1048

VL - 37

SP - D712-D719

JO - Nucleic Acids Research

JF - Nucleic Acids Research

IS - SUPPL. 1

ER -

The Mouse Genome Database genotypes::Phenotypes

Abstract

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