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On the need for an international effort to capture, share and use crystallization screening data

  • Janet Newman
  • , Evan E. Bolton
  • , Jochen Müller-Dieckmann
  • , Vincent J. Fazio
  • , D. Travis Gallagher
  • , David Lovell
  • , Joseph R. Luft
  • , Thomas S. Peat
  • , David Ratcliffe
  • , Roger A. Sayle
  • , Edward H. Snell
  • , Kerry Taylor
  • , Pascal Vallotton
  • , Sameer Velanker
  • , Frank Von Delft
  • CSIRO
  • NLM
  • European Molecular Biology Laboratory
  • National Institute of Standards and Technology
  • Australian National University
  • Hauptman-Woodward Medical Research Institute, Inc.
  • SUNY Buffalo
  • NextMove Software Limited
  • Macquarie University
  • Wellcome Trust
  • University of Oxford

Research output: Contribution to journalReview articlepeer-review

39 Scopus citations

Abstract

When crystallization screening is conducted many outcomes are observed but typically the only trial recorded in the literature is the condition that yielded the crystal(s) used for subsequent diffraction studies. The initial hit that was optimized and the results of all the other trials are lost. These missing results contain information that would be useful for an improved general understanding of crystallization. This paper provides a report of a crystallization data exchange (XDX) workshop organized by several international large-scale crystallization screening laboratories to discuss how this information may be captured and utilized. A group that administers a significant fraction of the worlds crystallization screening results was convened, together with chemical and structural data informaticians and computational scientists who specialize in creating and analysing large disparate data sets. The development of a crystallization ontology for the crystallization community was proposed. This paper (by the attendees of the workshop) provides the thoughts and rationale leading to this conclusion. This is brought to the attention of the wider audience of crystallographers so that they are aware of these early efforts and can contribute to the process going forward.

Original languageEnglish
Pages (from-to)253-258
Number of pages6
JournalActa Crystallographica Section F: Structural Biology and Crystallization Communications
Volume68
Issue number3
DOIs
StatePublished - Mar 2012

Keywords

  • crystallization ontology
  • crystallization screening data

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