OBO-Edit - An ontology editor for biologists

John Day-Richter; Midori A. Harris; Melissa Haendel; Jennifer I. Clark; Amelia Ireland; Jane Lomax; Karen Eilbeck; Suzanna Lewis; Chris Mungall; Alexander D. Diehl; Harold Drabkin; Karen R. Christie; Tanya Berardini; Petra Fey; Carol A. Bastiani; Ranjana Kishore; Victoria Petri; Shuly Avraham; Pankaj Jaiswal; Melissa Haendel; John Osborne

doi:10.1093/bioinformatics/btm112

OBO-Edit - An ontology editor for biologists

John Day-Richter
, Midori A. Harris
, Melissa Haendel
, Jennifer I. Clark
, Amelia Ireland
, Jane Lomax
, Karen Eilbeck
, Suzanna Lewis
, Chris Mungall
, Alexander D. Diehl
, Harold Drabkin
, Karen R. Christie
, Tanya Berardini
, Petra Fey
, Carol A. Bastiani
, Ranjana Kishore
, Victoria Petri
, Shuly Avraham
, Pankaj Jaiswal
, Melissa Haendel

John Osborne

Department of Biomedical Informatics

Lawrence Berkeley National Laboratory
Gene Ontology Consortium
European Molecular Biology Laboratory
University of Oregon
Jackson Laboratory
Stanford University
Carnegie Institution of Washington
Northwestern University
California Institute of Technology
Medical College of Wisconsin
Cold Spring Harbor Laboratory
Cornell University

Research output: Contribution to journal › Article › peer-review

215 Scopus citations

Abstract

Summary: OBO-Edit is an open source, platform-independent ontology editor developed and maintained by the Gene Ontology Consortium. Implemented in Java, OBO-Edit uses a graph-oriented approach to display and edit ontologies. OBO-Edit is particularly valuable for viewing and editing biomedical ontologies.

Original language	English
Pages (from-to)	2198-2200
Number of pages	3
Journal	Bioinformatics
Volume	23
Issue number	16
DOIs	https://doi.org/10.1093/bioinformatics/btm112
State	Published - Aug 15 2007

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10.1093/bioinformatics/btm112

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Day-Richter, J., Harris, M. A., Haendel, M., Clark, J. I., Ireland, A., Lomax, J., Eilbeck, K., Lewis, S., Mungall, C., Diehl, A. D., Drabkin, H., Christie, K. R., Berardini, T., Fey, P., Bastiani, C. A., Kishore, R., Petri, V., Avraham, S., Jaiswal, P., ... Osborne, J. (2007). OBO-Edit - An ontology editor for biologists. Bioinformatics, 23(16), 2198-2200. https://doi.org/10.1093/bioinformatics/btm112

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title = "OBO-Edit - An ontology editor for biologists",

abstract = "Summary: OBO-Edit is an open source, platform-independent ontology editor developed and maintained by the Gene Ontology Consortium. Implemented in Java, OBO-Edit uses a graph-oriented approach to display and edit ontologies. OBO-Edit is particularly valuable for viewing and editing biomedical ontologies.",

author = "John Day-Richter and Harris, \{Midori A.\} and Melissa Haendel and Clark, \{Jennifer I.\} and Amelia Ireland and Jane Lomax and Karen Eilbeck and Suzanna Lewis and Chris Mungall and Diehl, \{Alexander D.\} and Harold Drabkin and Christie, \{Karen R.\} and Tanya Berardini and Petra Fey and Bastiani, \{Carol A.\} and Ranjana Kishore and Victoria Petri and Shuly Avraham and Pankaj Jaiswal and Melissa Haendel and John Osborne",

year = "2007",

month = aug,

day = "15",

doi = "10.1093/bioinformatics/btm112",

language = "English",

volume = "23",

pages = "2198--2200",

journal = "Bioinformatics",

issn = "1367-4803",

publisher = "Oxford University Press",

number = "16",

}

Day-Richter, J, Harris, MA, Haendel, M, Clark, JI, Ireland, A, Lomax, J, Eilbeck, K, Lewis, S, Mungall, C, Diehl, AD, Drabkin, H, Christie, KR, Berardini, T, Fey, P, Bastiani, CA, Kishore, R, Petri, V, Avraham, S, Jaiswal, P, Haendel, M & Osborne, J 2007, 'OBO-Edit - An ontology editor for biologists', Bioinformatics, vol. 23, no. 16, pp. 2198-2200. https://doi.org/10.1093/bioinformatics/btm112

TY - JOUR

T1 - OBO-Edit - An ontology editor for biologists

AU - Day-Richter, John

AU - Harris, Midori A.

AU - Haendel, Melissa

AU - Clark, Jennifer I.

AU - Ireland, Amelia

AU - Lomax, Jane

AU - Eilbeck, Karen

AU - Lewis, Suzanna

AU - Mungall, Chris

AU - Diehl, Alexander D.

AU - Drabkin, Harold

AU - Christie, Karen R.

AU - Berardini, Tanya

AU - Fey, Petra

AU - Bastiani, Carol A.

AU - Kishore, Ranjana

AU - Petri, Victoria

AU - Avraham, Shuly

AU - Jaiswal, Pankaj

AU - Haendel, Melissa

AU - Osborne, John

PY - 2007/8/15

Y1 - 2007/8/15

N2 - Summary: OBO-Edit is an open source, platform-independent ontology editor developed and maintained by the Gene Ontology Consortium. Implemented in Java, OBO-Edit uses a graph-oriented approach to display and edit ontologies. OBO-Edit is particularly valuable for viewing and editing biomedical ontologies.

AB - Summary: OBO-Edit is an open source, platform-independent ontology editor developed and maintained by the Gene Ontology Consortium. Implemented in Java, OBO-Edit uses a graph-oriented approach to display and edit ontologies. OBO-Edit is particularly valuable for viewing and editing biomedical ontologies.

UR - https://www.scopus.com/pages/publications/34548595489

U2 - 10.1093/bioinformatics/btm112

DO - 10.1093/bioinformatics/btm112

M3 - Article

C2 - 17545183

AN - SCOPUS:34548595489

SN - 1367-4803

VL - 23

SP - 2198

EP - 2200

JO - Bioinformatics

JF - Bioinformatics

IS - 16

ER -

OBO-Edit - An ontology editor for biologists

Abstract

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