MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation

Yu Chieh Liao; Hsin Hung Lin; Amarpreet Sabharwal; Elaine M. Haase; Frank A. Scannapieco

doi:10.1016/j.mimet.2015.04.006

MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation

Yu Chieh Liao
, Hsin Hung Lin
, Amarpreet Sabharwal
, Elaine M. Haase
, Frank A. Scannapieco

Department of Oral Biology

National Health Research Institutes Taiwan
SUNY Buffalo

Research output: Contribution to journal › Article › peer-review

26 Scopus citations

Abstract

MyPro is a software pipeline for high-quality prokaryotic genome assembly and annotation. It was validated on 18 oral streptococcal strains to produce submission-ready, annotated draft genomes. MyPro installed as a virtual machine and supported by updated databases will enable biologists to perform quality prokaryotic genome assembly and annotation with ease.

Original language	English
Pages (from-to)	72-74
Number of pages	3
Journal	Journal of Microbiological Methods
Volume	113
DOIs	https://doi.org/10.1016/j.mimet.2015.04.006
State	Published - Jun 1 2015

Keywords

Annotation
Assembly
Bioinformatics
Prokaryote
Whole genome sequencing

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10.1016/j.mimet.2015.04.006

Cite this

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abstract = "MyPro is a software pipeline for high-quality prokaryotic genome assembly and annotation. It was validated on 18 oral streptococcal strains to produce submission-ready, annotated draft genomes. MyPro installed as a virtual machine and supported by updated databases will enable biologists to perform quality prokaryotic genome assembly and annotation with ease.",

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AU - Liao, Yu Chieh

AU - Lin, Hsin Hung

AU - Sabharwal, Amarpreet

AU - Haase, Elaine M.

AU - Scannapieco, Frank A.

PY - 2015/6/1

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AB - MyPro is a software pipeline for high-quality prokaryotic genome assembly and annotation. It was validated on 18 oral streptococcal strains to produce submission-ready, annotated draft genomes. MyPro installed as a virtual machine and supported by updated databases will enable biologists to perform quality prokaryotic genome assembly and annotation with ease.

KW - Annotation

KW - Assembly

KW - Bioinformatics

KW - Prokaryote

KW - Whole genome sequencing

UR - https://www.scopus.com/pages/publications/84929660186

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DO - 10.1016/j.mimet.2015.04.006

M3 - Article

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AN - SCOPUS:84929660186

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JF - Journal of Microbiological Methods

ER -

MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation

Abstract

Keywords

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