Gateways to the FANTOM5 promoter level mammalian expression atlas

FANTOM Consortium

doi:10.1186/s13059-014-0560-6

Gateways to the FANTOM5 promoter level mammalian expression atlas

FANTOM Consortium

Department of Biomedical Informatics

Omics Science Center
RIKEN
Lawrence Berkeley National Laboratory
University of Edinburgh
National University of Singapore
Research Organization of Information and Systems
Harvard University
University of Sheffield
Leiden University
the University of Western Australia
Wellcome Trust
University of Regensburg
University of Copenhagen

Research output: Contribution to journal › Article › peer-review

659 Scopus citations

Abstract

The FANTOM5 project investigates transcription initiation activities in more than 1,000 human and mouse primary cells, cell lines and tissues using CAGE. Based on manual curation of sample information and development of an ontology for sample classification, we assemble the resulting data into a centralized data resource (http://fantom.gsc.riken.jp/5/). This resource contains web-based tools and data-access points for the research community to search and extract data related to samples, genes, promoter activities, transcription factors and enhancers across the FANTOM5 atlas.

Original language	English
Article number	22
Journal	Genome Biology
Volume	16
Issue number	1
DOIs	https://doi.org/10.1186/s13059-014-0560-6
State	Published - Jan 5 2015

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10.1186/s13059-014-0560-6

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@article{86ea654509874286aaec57fd1de15871,

title = "Gateways to the FANTOM5 promoter level mammalian expression atlas",

abstract = "The FANTOM5 project investigates transcription initiation activities in more than 1,000 human and mouse primary cells, cell lines and tissues using CAGE. Based on manual curation of sample information and development of an ontology for sample classification, we assemble the resulting data into a centralized data resource (http://fantom.gsc.riken.jp/5/). This resource contains web-based tools and data-access points for the research community to search and extract data related to samples, genes, promoter activities, transcription factors and enhancers across the FANTOM5 atlas.",

author = "\{FANTOM Consortium\} and Marina Lizio and Jayson Harshbarger and Hisashi Shimoji and Jessica Severin and Takeya Kasukawa and Serkan Sahin and Imad Abugessaisa and Shiro Fukuda and Fumi Hori and Sachi Ishikawa-Kato and Mungall, \{Christopher J.\} and Erik Arner and Baillie, \{J. Kenneth\} and Nicolas Bertin and Hidemasa Bono and \{de Hoon\}, Michiel and Diehl, \{Alexander D.\} and Emmanuel Dimont and Freeman, \{Tom C.\} and Kaori Fujieda and Winston Hide and Rajaram Kaliyaperumal and Toshiaki Katayama and Timo Lassmann and Meehan, \{Terrence F.\} and Koro Nishikata and Hiromasa Ono and Michael Rehli and Albin Sandelin and Schultes, \{Erik A.\} and \{'t Hoen\}, \{Peter A.C.\} and Zuotian Tatum and Mark Thompson and Tetsuro Toyoda and Wright, \{Derek W.\} and Daub, \{Carsten O.\} and Masayoshi Itoh and Piero Carninci and Yoshihide Hayashizaki and Forrest, \{Alistair R.R.\} and Hideya Kawaji",

note = "Publisher Copyright: {\textcopyright} 2015 Lizio et al.; licensee BioMed Central.",

year = "2015",

month = jan,

day = "5",

doi = "10.1186/s13059-014-0560-6",

language = "English",

volume = "16",

journal = "Genome Biology",

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T1 - Gateways to the FANTOM5 promoter level mammalian expression atlas

AU - FANTOM Consortium

AU - Lizio, Marina

AU - Harshbarger, Jayson

AU - Shimoji, Hisashi

AU - Severin, Jessica

AU - Kasukawa, Takeya

AU - Sahin, Serkan

AU - Abugessaisa, Imad

AU - Fukuda, Shiro

AU - Hori, Fumi

AU - Ishikawa-Kato, Sachi

AU - Mungall, Christopher J.

AU - Arner, Erik

AU - Baillie, J. Kenneth

AU - Bertin, Nicolas

AU - Bono, Hidemasa

AU - de Hoon, Michiel

AU - Diehl, Alexander D.

AU - Dimont, Emmanuel

AU - Freeman, Tom C.

AU - Fujieda, Kaori

AU - Hide, Winston

AU - Kaliyaperumal, Rajaram

AU - Katayama, Toshiaki

AU - Lassmann, Timo

AU - Meehan, Terrence F.

AU - Nishikata, Koro

AU - Ono, Hiromasa

AU - Rehli, Michael

AU - Sandelin, Albin

AU - Schultes, Erik A.

AU - 't Hoen, Peter A.C.

AU - Tatum, Zuotian

AU - Thompson, Mark

AU - Toyoda, Tetsuro

AU - Wright, Derek W.

AU - Daub, Carsten O.

AU - Itoh, Masayoshi

AU - Carninci, Piero

AU - Hayashizaki, Yoshihide

AU - Forrest, Alistair R.R.

AU - Kawaji, Hideya

PY - 2015/1/5

Y1 - 2015/1/5

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SN - 1474-7596

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JO - Genome Biology

JF - Genome Biology

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ER -

Gateways to the FANTOM5 promoter level mammalian expression atlas

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