From genes to organisms via the cell a problem-solving environment for multicellular development

Trevor Cickovski; Kedar Aras; Mark S. Alber; Jesus A. Izaguirre; Maciej Swat; James A. Glazier; Roeland M.H. Merks; Tilmann Glimm; H. George E. Hentschel; Stuart A. Newman

doi:10.1109/MCSE.2007.74

From genes to organisms via the cell a problem-solving environment for multicellular development

Trevor Cickovski
, Kedar Aras
, Mark S. Alber
, Jesus A. Izaguirre
, Maciej Swat
, James A. Glazier
, Roeland M.H. Merks
, Tilmann Glimm
, H. George E. Hentschel
, Stuart A. Newman

Physiology and Biophysics

University of Notre Dame
Indiana University Bloomington
Ghent University
Western Washington University
Emory University
New York Medical College

Research output: Contribution to journal › Article › peer-review

45 Scopus citations

Abstract

To gain performance, developers often build scientific applications in procedural languages, such as C or Fortran, which unfortunately reduces flexibility. To address this imbalance, the authors present CompuCell3D, a multitiered, flexible, and scalable problem-solving environment for morphogenesis simulations that's written in C++ using object-oriented design patterns.

Original language	English
Article number	4263265
Pages (from-to)	50-60
Number of pages	11
Journal	Computing in Science and Engineering
Volume	9
Issue number	4
DOIs	https://doi.org/10.1109/MCSE.2007.74
State	Published - Jul 2007

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10.1109/MCSE.2007.74

Cite this

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abstract = "To gain performance, developers often build scientific applications in procedural languages, such as C or Fortran, which unfortunately reduces flexibility. To address this imbalance, the authors present CompuCell3D, a multitiered, flexible, and scalable problem-solving environment for morphogenesis simulations that's written in C++ using object-oriented design patterns.",

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AU - Cickovski, Trevor

AU - Aras, Kedar

AU - Alber, Mark S.

AU - Izaguirre, Jesus A.

AU - Swat, Maciej

AU - Glazier, James A.

AU - Merks, Roeland M.H.

AU - Glimm, Tilmann

AU - Hentschel, H. George E.

AU - Newman, Stuart A.

PY - 2007/7

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AB - To gain performance, developers often build scientific applications in procedural languages, such as C or Fortran, which unfortunately reduces flexibility. To address this imbalance, the authors present CompuCell3D, a multitiered, flexible, and scalable problem-solving environment for morphogenesis simulations that's written in C++ using object-oriented design patterns.

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DO - 10.1109/MCSE.2007.74

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From genes to organisms via the cell a problem-solving environment for multicellular development

Abstract

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