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Fourier harmonic approach for visualizing temporal patterns of gene expression data

  • SUNY Buffalo

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

11 Scopus citations

Abstract

DNA microarray technology provides a broad snapshot of the state of the cell by measuring the expression levels of thousands of genes simultaneously. Visualization techniques can enable the exploration and detection of patterns and relationships in a complex dataset by presenting the data in a graphical format in which the key characteristics become more apparent. The purpose of this study is to present an interactive visualization technique conveying the temporal patterns of gene expression data in a form intuitive for nonspecialized end-users. The first Fourier harmonic projection (FFHP) was introduced to translate the multidimensional time series data into a two dimensional scatter plot. The spatial relationship of the points reflect the structure of the original dataset and relationships among clusters become two dimensional. The proposed method was tested using two published, array-derived gene expression datasets. Our results demonstrate the effectiveness of the approach.

Original languageEnglish
Title of host publicationProceedings of the 2003 IEEE Bioinformatics Conference, CSB 2003
PublisherInstitute of Electrical and Electronics Engineers Inc.
Pages137-147
Number of pages11
ISBN (Electronic)0769520006, 9780769520001
DOIs
StatePublished - 2003
Event2nd International IEEE Computer Society Computational Systems Bioinformatics Conference, CSB 2003 - Stanford, United States
Duration: Aug 11 2003Aug 14 2003

Publication series

NameProceedings of the 2003 IEEE Bioinformatics Conference, CSB 2003

Conference

Conference2nd International IEEE Computer Society Computational Systems Bioinformatics Conference, CSB 2003
Country/TerritoryUnited States
CityStanford
Period08/11/0308/14/03

Keywords

  • Fourier harmonic projection
  • gene expression
  • time series
  • visualization

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