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Divergent evolution of a Rossmann fold and identification of its oldest surviving ancestor

  • William L. Duax
  • , Robert Huether
  • , Vladimir Pletnev
  • , Timothy C. Umland
  • , Charles M. Weeks
  • SUNY Buffalo
  • Russian Academy of Sciences

Research output: Contribution to journalArticlepeer-review

9 Scopus citations

Abstract

β-ketoacyl (acyl carrier protein) reductase (β-k-ACPR) enzymes are essential to fatty acid synthesis in bacteria. The analyses revealed the most primitive member of the β-k-ACPRs family was a NADP reductase where NADP was recognised by a Thr residue in the β2a3 turn. Aromatic residue stacking at the dimer interface and a previously undetected conserved sequence at the C-terminus, stabilise the oligomeric assembly of these proteins.Our analysis indicates that the primordial members of the β-k-ACPR family probably arose in the a-proteobacteria and are characterised by the presence of multiple open reading frames and an extreme codon and amino acid bias.

Original languageEnglish
Pages (from-to)280-294
Number of pages15
JournalInternational Journal of Bioinformatics Research and Applications
Volume5
Issue number3
DOIs
StatePublished - Jun 2009

Keywords

  • Bioinformatics
  • Cofactor identification
  • Molecular evolution
  • MORF
  • Multiple open reading frames
  • Sdr
  • Short chain oxidoreductase enzymes
  • Substrate prediction
  • Tetramer assembly
  • Β-ketoacyl [acyl carrier protein] reductase

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