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Classification of crystallization outcomes using deep convolutional neural networks

  • Andrew E. Bruno
  • , Patrick Charbonneau
  • , Janet Newman
  • , Edward H. Snell
  • , David R. So
  • , Vincent Vanhoucke
  • , Christopher J. Watkins
  • , Shawn Williams
  • , Julie Wilson
  • Duke University
  • CSIRO
  • Alphabet Inc.
  • GlaxoSmithKline
  • University of York

Research output: Contribution to journalArticlepeer-review

74 Scopus citations

Abstract

The Machine Recognition of Crystallization Outcomes (MARCO) initiative has assembled roughly half a million annotated images of macromolecular crystallization experiments from various sources and setups. Here, state-of-the-art machine learning algorithms are trained and tested on different parts of this data set. We find that more than 94% of the test images can be correctly labeled, irrespective of their experimental origin. Because crystal recognition is key to high-density screening and the systematic analysis of crystallization experiments, this approach opens the door to both industrial and fundamental research applications.

Original languageEnglish
Article numbere0198883
JournalPLOS ONE
Volume13
Issue number6
DOIs
StatePublished - Jun 2018

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