Applications of the ACGT master ontology on cancer

Mathias Brochhausen; Gabriele Weiler; Luis Martín; Cristian Cocos; Holger Stenzhorn; Norbert Graf; Martin Dörr; Manolis Tsiknakis; Barry Smith

doi:10.1007/978-3-540-88875-8_132

Applications of the ACGT master ontology on cancer

Mathias Brochhausen
, Gabriele Weiler
, Luis Martín
, Cristian Cocos
, Holger Stenzhorn
, Norbert Graf
, Martin Dörr
, Manolis Tsiknakis
, Barry Smith

Philosophy

Saarland University
Fraunhofer Institute for Biomedical Engineering
Technical University of Madrid
University of Freiburg
Foundation for Research and Technology-Hellas

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

2 Scopus citations

Abstract

In this paper we present applications of the ACGT Master Ontology (MO) which is a new terminology resource for a transnational network providing data exchange in oncology, emphasizing the integration of both clinical and molecular data. The development of a new ontology was necessary due to problems with existing biomedical ontologies in oncology. The ACGT MO is a test case for the application of best practices in ontology development. This paper provides an overview of the application of the ontology within the ACGT project thus far.

Original language	English
Title of host publication	On the Move to Meaningful Internet Systems
Subtitle of host publication	OTM 2008 Workshops - OTM Confederated InternationalWorkshops and Posters ADI, AWeSoMe, COMBEK, EI2N, IWSSA, MONET, OnToContent+QSI, ORM, PerSys, RDDS, SEMELS, and SWWS 2008, Proceedings
Editors	Robert Meersman, Zahir Tari, Pilar Herrero
Publisher	Springer Verlag
Pages	1046-1055
Number of pages	10
ISBN (Print)	9783540888741
DOIs	https://doi.org/10.1007/978-3-540-88875-8_132
State	Published - 2008
Event	International Conference on On the Move to Meaningful Internet Systems, OTM 2008 and held ADI 2008, AWeSoMe 2008, COMBEK 2008, EI2N 2008, IWSSA, MONET 2008, OnToContent 2008, QSI 2008, ORM 2008, PerSys 2008, RDDS 2008, SEMELS 2008 and SWWS 2008 - Monterrey, Mexico Duration: Nov 9 2008 → Nov 14 2008

Publication series

Name	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume	5333
ISSN (Print)	0302-9743
ISSN (Electronic)	1611-3349

Conference

Conference	International Conference on On the Move to Meaningful Internet Systems, OTM 2008 and held ADI 2008, AWeSoMe 2008, COMBEK 2008, EI2N 2008, IWSSA, MONET 2008, OnToContent 2008, QSI 2008, ORM 2008, PerSys 2008, RDDS 2008, SEMELS 2008 and SWWS 2008
Country/Territory	Mexico
City	Monterrey
Period	11/9/08 → 11/14/08

Keywords

Biomedical ontology
Clinical trials
Mediation

Access to Document

10.1007/978-3-540-88875-8_132

Cite this

Brochhausen, M., Weiler, G., Martín, L., Cocos, C., Stenzhorn, H., Graf, N., Dörr, M., Tsiknakis, M., & Smith, B. (2008). Applications of the ACGT master ontology on cancer. In R. Meersman, Z. Tari, & P. Herrero (Eds.), On the Move to Meaningful Internet Systems: OTM 2008 Workshops - OTM Confederated InternationalWorkshops and Posters ADI, AWeSoMe, COMBEK, EI2N, IWSSA, MONET, OnToContent+QSI, ORM, PerSys, RDDS, SEMELS, and SWWS 2008, Proceedings (pp. 1046-1055). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 5333). Springer Verlag. https://doi.org/10.1007/978-3-540-88875-8_132

Brochhausen, Mathias ; Weiler, Gabriele ; Martín, Luis et al. / Applications of the ACGT master ontology on cancer. On the Move to Meaningful Internet Systems: OTM 2008 Workshops - OTM Confederated InternationalWorkshops and Posters ADI, AWeSoMe, COMBEK, EI2N, IWSSA, MONET, OnToContent+QSI, ORM, PerSys, RDDS, SEMELS, and SWWS 2008, Proceedings. editor / Robert Meersman ; Zahir Tari ; Pilar Herrero. Springer Verlag, 2008. pp. 1046-1055 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).

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title = "Applications of the ACGT master ontology on cancer",

abstract = "In this paper we present applications of the ACGT Master Ontology (MO) which is a new terminology resource for a transnational network providing data exchange in oncology, emphasizing the integration of both clinical and molecular data. The development of a new ontology was necessary due to problems with existing biomedical ontologies in oncology. The ACGT MO is a test case for the application of best practices in ontology development. This paper provides an overview of the application of the ontology within the ACGT project thus far.",

keywords = "Biomedical ontology, Clinical trials, Mediation",

author = "Mathias Brochhausen and Gabriele Weiler and Luis Mart{\'i}n and Cristian Cocos and Holger Stenzhorn and Norbert Graf and Martin D{\"o}rr and Manolis Tsiknakis and Barry Smith",

note = "Publisher Copyright: {\textcopyright} Springer-Verlag Berlin Heidelberg 2008.; International Conference on On the Move to Meaningful Internet Systems, OTM 2008 and held ADI 2008, AWeSoMe 2008, COMBEK 2008, EI2N 2008, IWSSA, MONET 2008, OnToContent 2008, QSI 2008, ORM 2008, PerSys 2008, RDDS 2008, SEMELS 2008 and SWWS 2008 ; Conference date: 09-11-2008 Through 14-11-2008",

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Brochhausen, M, Weiler, G, Martín, L, Cocos, C, Stenzhorn, H, Graf, N, Dörr, M, Tsiknakis, M & Smith, B 2008, Applications of the ACGT master ontology on cancer. in R Meersman, Z Tari & P Herrero (eds), On the Move to Meaningful Internet Systems: OTM 2008 Workshops - OTM Confederated InternationalWorkshops and Posters ADI, AWeSoMe, COMBEK, EI2N, IWSSA, MONET, OnToContent+QSI, ORM, PerSys, RDDS, SEMELS, and SWWS 2008, Proceedings. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 5333, Springer Verlag, pp. 1046-1055, International Conference on On the Move to Meaningful Internet Systems, OTM 2008 and held ADI 2008, AWeSoMe 2008, COMBEK 2008, EI2N 2008, IWSSA, MONET 2008, OnToContent 2008, QSI 2008, ORM 2008, PerSys 2008, RDDS 2008, SEMELS 2008 and SWWS 2008, Monterrey, Mexico, 11/9/08. https://doi.org/10.1007/978-3-540-88875-8_132

Applications of the ACGT master ontology on cancer. / Brochhausen, Mathias; Weiler, Gabriele; Martín, Luis et al.
On the Move to Meaningful Internet Systems: OTM 2008 Workshops - OTM Confederated InternationalWorkshops and Posters ADI, AWeSoMe, COMBEK, EI2N, IWSSA, MONET, OnToContent+QSI, ORM, PerSys, RDDS, SEMELS, and SWWS 2008, Proceedings. ed. / Robert Meersman; Zahir Tari; Pilar Herrero. Springer Verlag, 2008. p. 1046-1055 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 5333).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

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T1 - Applications of the ACGT master ontology on cancer

AU - Brochhausen, Mathias

AU - Weiler, Gabriele

AU - Martín, Luis

AU - Cocos, Cristian

AU - Stenzhorn, Holger

AU - Graf, Norbert

AU - Dörr, Martin

AU - Tsiknakis, Manolis

AU - Smith, Barry

N1 - Publisher Copyright: © Springer-Verlag Berlin Heidelberg 2008.

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AB - In this paper we present applications of the ACGT Master Ontology (MO) which is a new terminology resource for a transnational network providing data exchange in oncology, emphasizing the integration of both clinical and molecular data. The development of a new ontology was necessary due to problems with existing biomedical ontologies in oncology. The ACGT MO is a test case for the application of best practices in ontology development. This paper provides an overview of the application of the ontology within the ACGT project thus far.

KW - Biomedical ontology

KW - Clinical trials

KW - Mediation

UR - https://www.scopus.com/pages/publications/77949452501

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T3 - Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

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BT - On the Move to Meaningful Internet Systems

A2 - Meersman, Robert

A2 - Tari, Zahir

A2 - Herrero, Pilar

PB - Springer Verlag

T2 - International Conference on On the Move to Meaningful Internet Systems, OTM 2008 and held ADI 2008, AWeSoMe 2008, COMBEK 2008, EI2N 2008, IWSSA, MONET 2008, OnToContent 2008, QSI 2008, ORM 2008, PerSys 2008, RDDS 2008, SEMELS 2008 and SWWS 2008

Y2 - 9 November 2008 through 14 November 2008

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Brochhausen M, Weiler G, Martín L, Cocos C, Stenzhorn H, Graf N et al. Applications of the ACGT master ontology on cancer. In Meersman R, Tari Z, Herrero P, editors, On the Move to Meaningful Internet Systems: OTM 2008 Workshops - OTM Confederated InternationalWorkshops and Posters ADI, AWeSoMe, COMBEK, EI2N, IWSSA, MONET, OnToContent+QSI, ORM, PerSys, RDDS, SEMELS, and SWWS 2008, Proceedings. Springer Verlag. 2008. p. 1046-1055. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)). doi: 10.1007/978-3-540-88875-8_132

Applications of the ACGT master ontology on cancer

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