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Accelerated 3D localization microscopy using blind sparse inpainting

  • Sunil Kumar Gaire
  • , Chaoyi Zhang
  • , Hongyu Li
  • , Peizhou Huang
  • , Ruiying Liu
  • , Haifeng Wang
  • , Dong Liang
  • , Leslie Ying
  • SUNY Buffalo

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

2 Scopus citations

Abstract

Single-molecule-localization based super-resolution microscopy has enabled the imaging of microscopic objects beyond the diffraction limit. However, these techniques are limited by the requirements of an extremely large number of frames for imaging of cell structures, thus having longer acquisition time. Here, we present a computational algorithm to accelerate 3D single-molecule localization microscopy technique by using blind sparse inpainting. This technique reconstructs the high-density super-resolution 3D images from low-density ones, maintaining similar structures as those of high-density images. The low-density images are generated using fewer frames than usually needed by the high-density images, thus requiring shorter acquisition time. Thus, the algorithm will accelerate 3D single-molecule imaging. The experimental 3D image reconstruction of microtubules using a reduced number of frames is presented to validate the concept.

Original languageEnglish
Title of host publicationISBI 2019 - 2019 IEEE International Symposium on Biomedical Imaging
PublisherIEEE Computer Society
Pages526-529
Number of pages4
ISBN (Electronic)9781538636411
DOIs
StatePublished - Apr 2019
Event16th IEEE International Symposium on Biomedical Imaging, ISBI 2019 - Venice, Italy
Duration: Apr 8 2019Apr 11 2019

Publication series

NameProceedings - International Symposium on Biomedical Imaging
Volume2019-April
ISSN (Print)1945-7928
ISSN (Electronic)1945-8452

Conference

Conference16th IEEE International Symposium on Biomedical Imaging, ISBI 2019
Country/TerritoryItaly
CityVenice
Period04/8/1904/11/19

Keywords

  • 3d image re-construction
  • Inpainting
  • Localization microscopy
  • Microtubules
  • Optical imaging
  • Optimization.
  • Super-resolution

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