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A realism-based view on counts in OMOP's common data model

  • SUNY Buffalo

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

7 Scopus citations

Abstract

Correctly counting entities is a requirement for analytics tools to function appropriately. The Observational Medical Outcomes Partnership's (OMOP) Common Data Model (CDM) specifications were examined to assess the extent to which counting in OMOP CDM compatible data repositories would work as expected. To that end, constructs (tables, fields and attributes) defined in the OMOP CDM as well as cardinality constraints and other business rules found in its documentation and related literature were compared to the types of entities and axioms proposed in realism-based ontologies. It was found that not only the model itself, but also a proposed standard algorithm for computing condition eras may lead to erroneous counting of several sorts of entities.

Original languageEnglish
Title of host publicationpHealth 2017 - Proceedings of the 14th International Conference on Wearable Micro and Nano Technologies for Personalized Health
EditorsBernd Blobel, William Goossen
PublisherIOS Press BV
Pages55-62
Number of pages8
ISBN (Electronic)9781614997603
DOIs
StatePublished - 2017
Event14th International Conference on Wearable Micro and Nano Technologies for Personalized Health, pHealth 2017 - Eindhoven, Netherlands
Duration: May 14 2017May 16 2017

Publication series

NameStudies in Health Technology and Informatics
Volume237
ISSN (Print)0926-9630
ISSN (Electronic)1879-8365

Conference

Conference14th International Conference on Wearable Micro and Nano Technologies for Personalized Health, pHealth 2017
Country/TerritoryNetherlands
CityEindhoven
Period05/14/1705/16/17

Keywords

  • Common data models
  • OMOP
  • Realism-based ontologies

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